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commands/hybrid-analyze.md
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# Analyze Hybrid Speciation Expert
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Use the hybrid speciation expert agent to analyze hybridization mechanisms, genomic introgression, and reproductive isolation evolution.
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## Usage
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```
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/hybrid-analyze <expert_name> [focus_area]
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```
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## Arguments
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- **expert_name** (required): The name of the hybrid speciation expert or researcher to analyze.
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- **focus_area** (optional): Specific aspect to focus on:
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- "hybridization" - Hybrid zone dynamics
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- "introgression" - Gene flow patterns
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- "reproductive_isolation" - Barrier mechanisms
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- "genomics" - Genomic analysis methods
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## Examples
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```
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/hybrid-analyze "Loren Rieseberg" "sunflower hybridization"
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/hybrid-analyze "Michael Arnold" "genomic introgression"
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/hybrid-analyze "James Mallet" "butterfly hybrid zones"
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```
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## What it does
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The agent will:
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1. **Literature Review**: Search and analyze academic papers on hybrid speciation and related topics
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2. **Specialized Analysis**:
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- Hybrid origin analysis and species formation
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- Gene flow mapping and genomic patterns
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- Speciation mechanism consulting
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3. **Case Studies**: Examine specific hybrid speciation events and their evolutionary significance
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4. **Method Assessment**: Evaluate current methods for detecting and studying hybridization
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## Output
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The analysis generates a comprehensive report including:
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- Expert's contributions to hybrid speciation theory
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- Analysis of genomic data and gene flow patterns
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- Assessment of reproductive isolation mechanisms
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- Practical recommendations for hybrid speciation research
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- Academic citations with relevant literature
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## Requirements
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This command requires the following MCP servers:
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- article-mcp (for literature search)
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- genome-mcp (for genomic data analysis)
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## Notes
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- Focuses on empirical evidence from natural and experimental hybrid zones
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- Integrates both classical and molecular approaches
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- Provides practical insights for current research projects
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- Includes critical assessment of methodological approaches
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