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gh-gqy20-cc-plugins-plugins…/commands/hybrid-analyze.md
2025-11-29 18:28:55 +08:00

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Analyze Hybrid Speciation Expert

Use the hybrid speciation expert agent to analyze hybridization mechanisms, genomic introgression, and reproductive isolation evolution.

Usage

/hybrid-analyze <expert_name> [focus_area]

Arguments

  • expert_name (required): The name of the hybrid speciation expert or researcher to analyze.
  • focus_area (optional): Specific aspect to focus on:
    • "hybridization" - Hybrid zone dynamics
    • "introgression" - Gene flow patterns
    • "reproductive_isolation" - Barrier mechanisms
    • "genomics" - Genomic analysis methods

Examples

/hybrid-analyze "Loren Rieseberg" "sunflower hybridization"
/hybrid-analyze "Michael Arnold" "genomic introgression"
/hybrid-analyze "James Mallet" "butterfly hybrid zones"

What it does

The agent will:

  1. Literature Review: Search and analyze academic papers on hybrid speciation and related topics

  2. Specialized Analysis:

    • Hybrid origin analysis and species formation
    • Gene flow mapping and genomic patterns
    • Speciation mechanism consulting
  3. Case Studies: Examine specific hybrid speciation events and their evolutionary significance

  4. Method Assessment: Evaluate current methods for detecting and studying hybridization

Output

The analysis generates a comprehensive report including:

  • Expert's contributions to hybrid speciation theory
  • Analysis of genomic data and gene flow patterns
  • Assessment of reproductive isolation mechanisms
  • Practical recommendations for hybrid speciation research
  • Academic citations with relevant literature

Requirements

This command requires the following MCP servers:

  • article-mcp (for literature search)
  • genome-mcp (for genomic data analysis)

Notes

  • Focuses on empirical evidence from natural and experimental hybrid zones
  • Integrates both classical and molecular approaches
  • Provides practical insights for current research projects
  • Includes critical assessment of methodological approaches