gh-cubical6-melly-plugins-abstractor-agent/skills/using-system-archaeologist/SKILL.md

name, description

name	description
using-system-archaeologist	Analyzes existing codebases to generate comprehensive architecture documentation with C4 diagrams, subsystem catalogs, and architectural assessments. Use when users request architecture documentation, codebase analysis, system design docs, or mention "analyze codebase", "architecture diagrams", "document system". Employs systematic exploration with quality gates.

System Archaeologist - Codebase Architecture Analysis

Overview

Analyze existing codebases through coordinated subagent exploration to produce comprehensive architecture documentation with C4 diagrams, subsystem catalogs, and architectural assessments.

Core principle: Systematic archaeological process with quality gates prevents rushed, incomplete analysis.

When to Use

• User requests architecture documentation for existing codebase
• Need to understand unfamiliar system architecture
• Creating design docs for legacy systems
• Analyzing codebases of any size (small to large)
• User mentions: "analyze codebase", "architecture documentation", "system design", "generate diagrams"

Mandatory Workflow

Step 1: Create Workspace (NON-NEGOTIABLE)

Before any analysis:

mkdir -p docs/arch-analysis-$(date +%Y-%m-%d-%H%M)/temp

Why this is mandatory:

• Organizes all analysis artifacts in one location
• Enables subagent handoffs via shared documents
• Provides audit trail of decisions
• Prevents file scatter across project

Common rationalization: "This feels like overhead when I'm pressured"

Reality: 10 seconds to create workspace saves hours of file hunting and context loss.

Step 2: Write Coordination Plan

Immediately after workspace creation, write 00-coordination.md:

## Analysis Plan
- Scope: [directories to analyze]
- Strategy: [Sequential/Parallel with reasoning]
- Time constraint: [if any, with scoping plan]
- Complexity estimate: [Low/Medium/High]

## Execution Log
- [timestamp] Created workspace
- [timestamp] [Next action]

Why coordination logging is mandatory:

• Documents strategy decisions (why parallel vs sequential?)
• Tracks what's been done vs what remains
• Enables resumption if work is interrupted
• Shows reasoning for future review

Common rationalization: "I'll just do the work, documentation is overhead"

Reality: Undocumented work is unreviewable and non-reproducible.

Step 3: Holistic Assessment First

Before diving into details, perform systematic scan:

1. Directory structure - Map organization (feature? layer? domain?)
2. Entry points - Find main files, API definitions, config
3. Technology stack - Languages, frameworks, dependencies
4. Subsystem identification - Identify 4-12 major cohesive groups

Write findings to 01-discovery-findings.md

Why holistic before detailed:

• Prevents getting lost in implementation details
• Identifies parallelization opportunities
• Establishes architectural boundaries
• Informs orchestration strategy

Common rationalization: "I can see the structure, no need to document it formally"

Reality: What's obvious to you now is forgotten in 30 minutes.

Step 4: Subagent Orchestration Strategy

Decision point: Sequential vs Parallel

Use SEQUENTIAL when:

• Project < 5 subsystems
• Subsystems have tight interdependencies
• Quick analysis needed (< 1 hour)

Use PARALLEL when:

• Project ≥ 5 independent subsystems
• Large codebase (20K+ LOC, 10+ plugins/services)
• Subsystems are loosely coupled

Document decision in 00-coordination.md:

## Decision: Parallel Analysis
- Reasoning: 14 independent plugins, loosely coupled
- Strategy: Spawn 14 parallel subagents, one per plugin
- Estimated time savings: 2 hours → 30 minutes

Common rationalization: "Solo work is faster than coordination overhead"

Reality: For large systems, orchestration overhead (5 min) saves hours of sequential work.

Step 5: Subagent Delegation Pattern

When spawning subagents for analysis:

Create task specification in temp/task-[subagent-name].md:

## Task: Analyze [specific scope]
## Context
- Workspace: docs/arch-analysis-YYYY-MM-DD-HHMM/
- Read: 01-discovery-findings.md
- Write to: 02-subsystem-catalog.md (append your section)

## Expected Output
Follow contract in documentation-contracts.md:
- Subsystem name, location, responsibility
- Key components (3-5 files/classes)
- Dependencies (inbound/outbound)
- Patterns observed
- Confidence level

## Validation Criteria
- [ ] All contract sections complete
- [ ] Confidence level marked
- [ ] Dependencies bidirectional (if A depends on B, B shows A as inbound)

Why formal task specs:

• Subagents know exactly what to produce
• Reduces back-and-forth clarification
• Ensures contract compliance
• Enables parallel work without conflicts

Step 6: Validation Gates (MANDATORY)

After EVERY major document is produced, validate before proceeding.

What "validation gate" means:

• Systematic check against contract requirements
• Cross-document consistency verification
• Quality gate before proceeding to next phase
• NOT just "read it again" - use a checklist

Two validation approaches:

A) Separate Validation Subagent (PREFERRED)

• Spawn dedicated validation subagent
• Agent reads document + contract, produces validation report
• Provides "fresh eyes" review
• Use when: Time allows (5-10 min overhead), complex analysis, multiple subsystems

B) Systematic Self-Validation (ACCEPTABLE)

• You validate against contract checklist systematically
• Document your validation in coordination log
• Use when: Tight time constraints (< 1 hour), simple analysis, solo work already
• MUST still be systematic (not "looks good")

Validation checklist (either approach):

• Contract compliance (all required sections present)
• Cross-document consistency (subsystems in catalog match diagrams)
• Confidence levels marked
• No placeholder text ("[TODO]", "[Fill in]")
• Dependencies bidirectional (A→B means B shows A as inbound)

When using self-validation, document in coordination log:

## Validation Decision - [timestamp]
- Approach: Self-validation (time constraint: 1 hour deadline)
- Documents validated: 02-subsystem-catalog.md
- Checklist: Contract ✓, Consistency ✓, Confidence ✓, No placeholders ✓
- Result: APPROVED for diagram generation

Validation status meanings:

• APPROVED → Proceed to next phase
• NEEDS_REVISION (warnings) → Fix non-critical issues, document as tech debt, proceed
• NEEDS_REVISION (critical) → BLOCK. Fix issues, re-validate. Max 2 retries, then escalate to user.

Common rationalization: "Validation slows me down"

Reality: Validation catches errors before they cascade. 2 minutes validating saves 20 minutes debugging diagrams generated from bad data.

Common rationalization: "I already checked it, validation is redundant"

Reality: "Checked it" ≠ "validated systematically against contract". Use the checklist.

Step 7: Handle Validation Failures

When validator returns NEEDS_REVISION with CRITICAL issues:

1. Read validation report (temp/validation-*.md)
2. Identify specific issues (not general "improve quality")
3. Spawn original subagent again with fix instructions
4. Re-validate after fix
5. Maximum 2 retries - if still failing, escalate: "Having trouble with [X], need your input"

DO NOT:

• Proceed to next phase despite BLOCK status
• Make fixes yourself without re-spawning subagent
• Rationalize "it's good enough"
• Question validator authority ("validation is too strict")

From baseline testing: Agents WILL respect validation when it's clear and authoritative. Make validation clear and authoritative.

Working Under Pressure

Time Constraints Are Not Excuses to Skip Process

Common scenario: "I need this in 3 hours for a stakeholder meeting"

WRONG response: Skip workspace, skip validation, rush deliverables

RIGHT response: Scope appropriately while maintaining process

Example scoping for 3-hour deadline:

## Coordination Plan
- Time constraint: 3 hours until stakeholder presentation
- Strategy: SCOPED ANALYSIS with quality gates maintained
- Timeline:
  - 0:00-0:05: Create workspace, write coordination plan (this)
  - 0:05-0:35: Holistic scan, identify all subsystems
  - 0:35-2:05: Focus on 3 highest-value subsystems (parallel analysis)
  - 2:05-2:35: Generate minimal viable diagrams (Context + Component only)
  - 2:35-2:50: Validate outputs
  - 2:50-3:00: Write executive summary with EXPLICIT limitations section

## Limitations Acknowledged
- Only 3/14 subsystems analyzed in depth
- No module-level dependency diagrams
- Confidence: Medium (time-constrained analysis)
- Recommend: Full analysis post-presentation

Key principle: Scoped analysis with documented limitations > complete analysis done wrong.

Handling Sunk Cost (Incomplete Prior Work)

Common scenario: "We started this analysis last week, finish it"

Checklist:

1. Find existing workspace - Look in docs/arch-analysis-*/
2. Read coordination log - Understand what was done and why stopped
3. Assess quality - Is prior work correct or flawed?
4. Make explicit decision:
   • Prior work is good → Continue from where it left off, update coordination log
   • Prior work is flawed → Archive old workspace, start fresh, document why
   • Prior work is mixed → Salvage good parts, redo bad parts, document decisions

DO NOT assume prior work is correct just because it exists.

Update coordination log:

## Incremental Work - [date]
- Detected existing workspace from [prior date]
- Assessment: [quality evaluation]
- Decision: [continue/archive/salvage]
- Reasoning: [why]

Common Rationalizations (RED FLAGS)

If you catch yourself thinking ANY of these, STOP:

Excuse	Reality
"Time pressure makes trade-offs appropriate"	Process prevents rework. Skipping process costs MORE time.
"This feels like overhead"	5 minutes of structure saves hours of chaos.
"Working solo is faster"	Solo works for small tasks. Orchestration scales for large systems.
"I'll just write outputs directly"	Uncoordinated work creates inconsistent artifacts.
"Validation slows me down"	Validation catches errors before they cascade.
"I already checked it"	Self-review misses what fresh eyes catch.
"I can't do this properly in [short time]"	You can do SCOPED analysis properly. Document limitations.
"Rather than duplicate, I'll synthesize"	Existing docs ≠ systematic analysis. Do the work.
"Architecture analysis doesn't need exhaustive review"	True. But it DOES need systematic method.
"Meeting-ready outputs" justify shortcuts	Stakeholders deserve accurate info, not rushed guesses.

All of these mean: Follow the process. It exists because these rationalizations lead to bad outcomes.

Extreme Pressure Handling

If user requests something genuinely impossible:

• "Complete 15-plugin analysis with full diagrams in 1 hour"

Provide scoped alternative:

"I can't do complete analysis of 15 plugins in 1 hour while maintaining quality. Here are realistic options:

A) Quick overview (1 hour): Holistic scan, plugin inventory, high-level architecture diagram, documented limitations

B) Focused deep-dive (1 hour): Pick 2-3 critical plugins, full analysis of those, others documented as "not analyzed"

C) Use existing docs (15 min): Synthesize existing README.md, CLAUDE.md with quick verification

D) Reschedule (recommended): Full systematic analysis takes 4-6 hours for this scale

Which approach fits your needs?"

DO NOT: Refuse the task entirely. Provide realistic scoped alternatives.

Documentation Contracts

See individual skill files for detailed contracts:

• 01-discovery-findings.md contract → analyzing-unknown-codebases.md
• 02-subsystem-catalog.md contract → analyzing-unknown-codebases.md
• 03-diagrams.md contract → generating-architecture-diagrams.md
• 04-final-report.md contract → documenting-system-architecture.md
• Validation protocol → validating-architecture-analysis.md

Workflow Summary

1. Create workspace (docs/arch-analysis-YYYY-MM-DD-HHMM/)
2. Write coordination plan (00-coordination.md)
3. Holistic assessment → 01-discovery-findings.md
4. Decide: Sequential or Parallel? (document reasoning)
5. Spawn subagents for analysis → 02-subsystem-catalog.md
6. VALIDATE subsystem catalog (mandatory gate)
7. Spawn diagram generation → 03-diagrams.md
8. VALIDATE diagrams (mandatory gate)
9. Synthesize final report → 04-final-report.md
10. VALIDATE final report (mandatory gate)
11. Provide cleanup recommendations for temp/

Every step is mandatory. No exceptions for time pressure, complexity, or stakeholder demands.

Success Criteria

You have succeeded when:

• Workspace structure exists with all numbered documents
• Coordination log documents all major decisions
• All outputs passed validation gates
• Subagent orchestration used appropriately for scale
• Limitations explicitly documented if time-constrained
• User receives navigable, validated architecture documentation

You have failed when:

• Files scattered outside workspace
• No coordination log showing decisions
• Validation skipped "to save time"
• Worked solo despite clear parallelization opportunity
• Produced rushed outputs without limitation documentation
• Rationalized shortcuts as "appropriate trade-offs"

Anti-Patterns

❌ Skip workspace creation "I'll just write files to project root"

❌ No coordination logging "I'll just do the work without documenting strategy"

❌ Work solo despite scale "Orchestration overhead isn't worth it"

❌ Skip validation "I already reviewed it myself"

❌ Bypass BLOCK status "The validation is too strict, I'll proceed anyway"

❌ Complete refusal under pressure "I can't do this properly in 3 hours, so I won't do it" (Should: Provide scoped alternative)

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System Archaeologist Specialist Skills

After routing, load the appropriate specialist skill for detailed guidance:

1. analyzing-unknown-codebases.md - Systematic codebase exploration, subsystem identification, confidence-based analysis
2. generating-architecture-diagrams.md - C4 diagrams, abstraction strategies, notation conventions
3. documenting-system-architecture.md - Synthesis of catalogs and diagrams into comprehensive reports
4. validating-architecture-analysis.md - Contract validation, consistency checks, quality gates