Initial commit

skills/phylo_from_buscos/templates/pbs/08a_partition_search.job

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+#!/bin/bash
+#PBS -N iqtree_partition
+#PBS -l nodes=1:ppn=18
+#PBS -l mem=72gb
+#PBS -l walltime=72:00:00
+
+cd $PBS_O_WORKDIR/06_concatenation
+source ~/.bashrc
+conda activate phylo
+
+iqtree \
+  -s FcC_supermatrix.fas \
+  -spp partition_def.txt \
+  -nt 18 \
+  -safe \
+  -pre partition_search \
+  -m TESTMERGEONLY \
+  -mset MODEL_SET \
+  -msub nuclear \
+  -rcluster 10 \
+  -bb 1000 \
+  -alrt 1000