23 lines
390 B
Bash
23 lines
390 B
Bash
#!/bin/bash
|
|
#PBS -N iqtree_partition
|
|
#PBS -l nodes=1:ppn=18
|
|
#PBS -l mem=72gb
|
|
#PBS -l walltime=72:00:00
|
|
|
|
cd $PBS_O_WORKDIR/06_concatenation
|
|
source ~/.bashrc
|
|
conda activate phylo
|
|
|
|
iqtree \
|
|
-s FcC_supermatrix.fas \
|
|
-spp partition_def.txt \
|
|
-nt 18 \
|
|
-safe \
|
|
-pre partition_search \
|
|
-m TESTMERGEONLY \
|
|
-mset MODEL_SET \
|
|
-msub nuclear \
|
|
-rcluster 10 \
|
|
-bb 1000 \
|
|
-alrt 1000
|