Initial commit

skills/clinical-reports/scripts/compliance_checker.py

@@ -0,0 +1,78 @@
+#!/usr/bin/env python3
+"""
+Check clinical reports for regulatory compliance (HIPAA, GCP, FDA).
+
+Usage:
+    python compliance_checker.py <report_file>
+"""
+
+import argparse
+import json
+import re
+
+
+COMPLIANCE_CHECKS = {
+    "hipaa": {
+        "consent_statement": r"(?i)(informed\s+consent|written\s+consent).*obtained",
+        "deidentification": r"(?i)(de-identif|anonymi[sz])",
+    },
+    "gcp": {
+        "irb_approval": r"(?i)(IRB|IEC|ethics\s+committee).*approv",
+        "protocol_compliance": r"(?i)protocol",
+        "informed_consent": r"(?i)informed\s+consent",
+    },
+    "fda": {
+        "study_id": r"(?i)(IND|IDE|protocol)\s+(number|#)[:]\s*\S+",
+        "safety_reporting": r"(?i)(adverse\s+event|SAE)",
+    }
+}
+
+
+def check_compliance(filename: str) -> dict:
+    """Check regulatory compliance."""
+    with open(filename, 'r', encoding='utf-8') as f:
+        content = f.read()
+    
+    results = {}
+    for regulation, checks in COMPLIANCE_CHECKS.items():
+        reg_results = {}
+        for check_name, pattern in checks.items():
+            reg_results[check_name] = bool(re.search(pattern, content))
+        results[regulation] = reg_results
+    
+    return {"filename": filename, "compliance": results}
+
+
+def main():
+    """Main entry point."""
+    parser = argparse.ArgumentParser(description="Check regulatory compliance")
+    parser.add_argument("input_file", help="Path to clinical report")
+    parser.add_argument("--json", action="store_true")
+    
+    args = parser.parse_args()
+    
+    try:
+        report = check_compliance(args.input_file)
+        
+        if args.json:
+            print(json.dumps(report, indent=2))
+        else:
+            print("\nRegulatory Compliance Check:\n")
+            for reg, checks in report["compliance"].items():
+                print(f"{reg.upper()}:")
+                for check, passed in checks.items():
+                    symbol = "✓" if passed else "✗"
+                    print(f"  {symbol} {check}")
+                print()
+        
+        return 0
+        
+    except Exception as e:
+        print(f"Error: {e}")
+        return 1
+
+
+if __name__ == "__main__":
+    import sys
+    sys.exit(main())
+