28 lines
583 B
Bash
28 lines
583 B
Bash
#!/bin/bash
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#SBATCH --job-name=iqtree_partition
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#SBATCH --cpus-per-task=18
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#SBATCH --mem-per-cpu=4G
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#SBATCH --time=72:00:00
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#SBATCH --output=logs/partition_search.out
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#SBATCH --error=logs/partition_search.err
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source ~/.bashrc
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conda activate phylo
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cd 06_concatenation # Use organized directory structure
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iqtree \
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-s FcC_supermatrix.fas \
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-spp partition_def.txt \
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-nt ${SLURM_CPUS_PER_TASK} \
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-safe \
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-pre partition_search \
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-m TESTMERGEONLY \
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-mset MODEL_SET \
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-msub nuclear \
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-rcluster 10 \
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-bb 1000 \
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-alrt 1000
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# Output: partition_search.best_scheme.nex
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