21 lines
365 B
Bash
21 lines
365 B
Bash
#!/bin/bash
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source ~/.bashrc
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conda activate phylo
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cd 06_concatenation
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iqtree \
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-s FcC_supermatrix.fas \
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-spp partition_def.txt \
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-nt 18 \
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-safe \
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-pre partition_search \
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-m TESTMERGEONLY \
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-mset MODEL_SET \
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-msub nuclear \
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-rcluster 10 \
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-bb 1000 \
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-alrt 1000
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echo "Partition search complete! Best scheme: partition_search.best_scheme.nex"
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