gh-akougkas-claude-code-4-science-warpio/commands/warpio-workflow-edit.md

description, argument-hint, allowed-tools

description	argument-hint	allowed-tools
Edit and modify existing scientific workflows	<workflow-name> [component]	Task, Write, Read, Edit, mcp__filesystem__*

Edit Scientific Workflow

Workflow: $ARGUMENTS

I'll help you modify and improve your existing scientific workflow using Warpio's expert system.

Editing Capabilities

1. Workflow Structure

• Add/remove stages in the processing pipeline
• Modify data flow between components
• Change execution order and dependencies
• Update resource requirements and allocations

2. Component Modification

• Update processing logic for individual stages
• Modify parameters and configuration settings
• Change expert assignments for specific tasks
• Update error handling and recovery procedures

3. Optimization Features

• Performance tuning for better execution speed
• Resource optimization to reduce costs
• Parallelization improvements for scalability
• Memory usage optimization for large datasets

4. Validation & Testing

• Syntax checking for workflow configuration
• Dependency validation between components
• Test data generation for validation
• Performance benchmarking before/after changes

Interactive Editing

Available Operations:

1. Add Component: Insert new processing stages
2. Remove Component: Delete unnecessary stages
3. Modify Parameters: Update configuration settings
4. Reorder Steps: Change execution sequence
5. Update Resources: Modify compute requirements
6. Test Changes: Validate modifications
7. Preview Impact: See how changes affect workflow

Expert Integration:

• Data Expert: Data format and processing changes
• HPC Expert: Compute resource and parallelization updates
• Analysis Expert: Statistical and visualization modifications
• Research Expert: Documentation and validation updates
• Workflow Expert: Overall orchestration and dependency management

Safety Features

Backup & Recovery:

• Automatic backups before major changes
• Change history tracking
• Rollback capability to previous versions
• Impact analysis before applying changes

Validation Checks:

• Syntax validation for configuration files
• Dependency checking between components
• Resource requirement verification
• Test execution with sample data

Usage Examples

# Edit specific workflow
/warpio-workflow-edit my-analysis-workflow

# Edit specific component
/warpio-workflow-edit my-analysis-workflow data-processing-stage

# Interactive editing mode
/warpio-workflow-edit my-workflow --interactive

The workflow will be updated with your changes while maintaining proper expert coordination and error handling.