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commands/warpio-workflow-edit.md

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+---
+description: Edit and modify existing scientific workflows
+argument-hint: <workflow-name> [component]
+allowed-tools: Task, Write, Read, Edit, mcp__filesystem__*
+---
+
+# Edit Scientific Workflow
+
+**Workflow:** $ARGUMENTS
+
+I'll help you modify and improve your existing scientific workflow using Warpio's expert system.
+
+## Editing Capabilities
+
+### 1. Workflow Structure
+- **Add/remove stages** in the processing pipeline
+- **Modify data flow** between components
+- **Change execution order** and dependencies
+- **Update resource requirements** and allocations
+
+### 2. Component Modification
+- **Update processing logic** for individual stages
+- **Modify parameters** and configuration settings
+- **Change expert assignments** for specific tasks
+- **Update error handling** and recovery procedures
+
+### 3. Optimization Features
+- **Performance tuning** for better execution speed
+- **Resource optimization** to reduce costs
+- **Parallelization improvements** for scalability
+- **Memory usage optimization** for large datasets
+
+### 4. Validation & Testing
+- **Syntax checking** for workflow configuration
+- **Dependency validation** between components
+- **Test data generation** for validation
+- **Performance benchmarking** before/after changes
+
+## Interactive Editing
+
+### Available Operations:
+1. **Add Component**: Insert new processing stages
+2. **Remove Component**: Delete unnecessary stages
+3. **Modify Parameters**: Update configuration settings
+4. **Reorder Steps**: Change execution sequence
+5. **Update Resources**: Modify compute requirements
+6. **Test Changes**: Validate modifications
+7. **Preview Impact**: See how changes affect workflow
+
+### Expert Integration:
+- **Data Expert**: Data format and processing changes
+- **HPC Expert**: Compute resource and parallelization updates
+- **Analysis Expert**: Statistical and visualization modifications
+- **Research Expert**: Documentation and validation updates
+- **Workflow Expert**: Overall orchestration and dependency management
+
+## Safety Features
+
+### Backup & Recovery:
+- **Automatic backups** before major changes
+- **Change history** tracking
+- **Rollback capability** to previous versions
+- **Impact analysis** before applying changes
+
+### Validation Checks:
+- **Syntax validation** for configuration files
+- **Dependency checking** between components
+- **Resource requirement verification**
+- **Test execution** with sample data
+
+## Usage Examples
+
+```bash
+# Edit specific workflow
+/warpio-workflow-edit my-analysis-workflow
+
+# Edit specific component
+/warpio-workflow-edit my-analysis-workflow data-processing-stage
+
+# Interactive editing mode
+/warpio-workflow-edit my-workflow --interactive
+```
+
+The workflow will be updated with your changes while maintaining proper expert coordination and error handling.