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# Reference Document Template
This file demonstrates how to structure detailed reference material that Claude loads on-demand.
**When to use this reference**: Include a clear statement about when Claude should consult this document.
For example: "Consult this reference when analyzing Python code for security vulnerabilities and needing detailed remediation patterns."
**Document purpose**: Briefly explain what this reference provides that's not in SKILL.md.
---
## Table of Contents
**For documents >100 lines, always include a table of contents** to help Claude navigate quickly.
- [When to Use References](#when-to-use-references)
- [Document Organization](#document-organization)
- [Detailed Technical Content](#detailed-technical-content)
- [Security Framework Mappings](#security-framework-mappings)
- [OWASP Top 10](#owasp-top-10)
- [CWE Mappings](#cwe-mappings)
- [MITRE ATT&CK](#mitre-attck)
- [Remediation Patterns](#remediation-patterns)
- [Advanced Configuration](#advanced-configuration)
- [Examples and Code Samples](#examples-and-code-samples)
---
## When to Use References
**Move content from SKILL.md to references/** when:
1. **Content exceeds 100 lines** - Keep SKILL.md concise
2. **Framework-specific details** - Detailed OWASP/CWE/MITRE mappings
3. **Advanced user content** - Deep technical details for expert users
4. **Lookup-oriented content** - Rule libraries, configuration matrices, comprehensive lists
5. **Language-specific patterns** - Separate files per language/framework
6. **Historical context** - Old patterns and deprecated approaches
**Keep in SKILL.md**:
- Core workflows (top 3-5 use cases)
- Decision points and branching logic
- Quick start guidance
- Essential security considerations
---
## Document Organization
### Structure for Long Documents
For references >100 lines:
```markdown
# Title
**When to use**: Clear trigger statement
**Purpose**: What this provides
## Table of Contents
- Links to all major sections
## Quick Reference
- Key facts or commands for fast lookup
## Detailed Content
- Comprehensive information organized logically
## Framework Mappings
- OWASP, CWE, MITRE ATT&CK references
## Examples
- Code samples and patterns
```
### Section Naming Conventions
- Use **imperative** or **declarative** headings
- ✅ "Detecting SQL Injection" not "How to detect SQL Injection"
- ✅ "Common Patterns" not "These are common patterns"
- Make headings **searchable** and **specific**
---
## Detailed Technical Content
This section demonstrates the type of detailed content that belongs in references rather than SKILL.md.
### Example: Comprehensive Vulnerability Detection
#### SQL Injection Detection Patterns
**Pattern 1: String Concatenation in Queries**
```python
# Vulnerable pattern
query = "SELECT * FROM users WHERE id = " + user_id
cursor.execute(query)
# Detection criteria:
# - SQL keyword (SELECT, INSERT, UPDATE, DELETE)
# - String concatenation operator (+, f-string)
# - Variable user input (request params, form data)
# Severity: HIGH
# CWE: CWE-89
# OWASP: A03:2021 - Injection
```
**Remediation**:
```python
# Fixed: Parameterized query
query = "SELECT * FROM users WHERE id = ?"
cursor.execute(query, (user_id,))
# OR using ORM
user = User.objects.get(id=user_id)
```
**Pattern 2: Unsafe String Formatting**
```python
# Vulnerable patterns
query = f"SELECT * FROM users WHERE name = '{username}'"
query = "SELECT * FROM users WHERE name = '%s'" % username
query = "SELECT * FROM users WHERE name = '{}'".format(username)
# All three patterns are vulnerable to SQL injection
```
#### Cross-Site Scripting (XSS) Detection
**Pattern 1: Unescaped Output in Templates**
```javascript
// Vulnerable: Direct HTML injection
element.innerHTML = userInput;
document.write(userInput);
// Vulnerable: React dangerouslySetInnerHTML
<div dangerouslySetInnerHTML={{__html: userComment}} />
// Detection criteria:
# - Direct DOM manipulation (innerHTML, document.write)
# - React dangerouslySetInnerHTML with user data
# - Template engines with autoescaping disabled
// Severity: HIGH
// CWE: CWE-79
// OWASP: A03:2021 - Injection
```
**Remediation**:
```javascript
// Fixed: Escaped output
element.textContent = userInput; // Auto-escapes
// Fixed: Sanitization library
import DOMPurify from 'dompurify';
const clean = DOMPurify.sanitize(userComment);
<div dangerouslySetInnerHTML={{__html: clean}} />
```
---
## Security Framework Mappings
This section provides comprehensive security framework mappings for findings.
### OWASP Top 10
Map security findings to OWASP Top 10 (2021) categories:
| Category | Title | Common Vulnerabilities |
|----------|-------|----------------------|
| **A01:2021** | Broken Access Control | Authorization bypass, privilege escalation, IDOR |
| **A02:2021** | Cryptographic Failures | Weak crypto, plaintext storage, insecure TLS |
| **A03:2021** | Injection | SQL injection, XSS, command injection, LDAP injection |
| **A04:2021** | Insecure Design | Missing security controls, threat modeling gaps |
| **A05:2021** | Security Misconfiguration | Default configs, verbose errors, unnecessary features |
| **A06:2021** | Vulnerable Components | Outdated libraries, unpatched dependencies |
| **A07:2021** | Auth & Session Failures | Weak passwords, session fixation, missing MFA |
| **A08:2021** | Software & Data Integrity | Unsigned updates, insecure CI/CD, deserialization |
| **A09:2021** | Logging & Monitoring Failures | Insufficient logging, no alerting, log injection |
| **A10:2021** | SSRF | Server-side request forgery, unvalidated redirects |
**Usage**: When reporting findings, map to primary OWASP category and reference the identifier (e.g., "A03:2021 - Injection").
### CWE Mappings
Map to relevant Common Weakness Enumeration categories for precise vulnerability classification:
#### Injection Vulnerabilities
- **CWE-78**: OS Command Injection
- **CWE-79**: Cross-site Scripting (XSS)
- **CWE-89**: SQL Injection
- **CWE-90**: LDAP Injection
- **CWE-91**: XML Injection
- **CWE-94**: Code Injection
#### Authentication & Authorization
- **CWE-287**: Improper Authentication
- **CWE-288**: Authentication Bypass Using Alternate Path
- **CWE-290**: Authentication Bypass by Spoofing
- **CWE-294**: Authentication Bypass by Capture-replay
- **CWE-306**: Missing Authentication for Critical Function
- **CWE-307**: Improper Restriction of Excessive Authentication Attempts
- **CWE-352**: Cross-Site Request Forgery (CSRF)
#### Cryptographic Issues
- **CWE-256**: Plaintext Storage of Password
- **CWE-259**: Use of Hard-coded Password
- **CWE-261**: Weak Encoding for Password
- **CWE-321**: Use of Hard-coded Cryptographic Key
- **CWE-326**: Inadequate Encryption Strength
- **CWE-327**: Use of Broken or Risky Cryptographic Algorithm
- **CWE-329**: Not Using a Random IV with CBC Mode
- **CWE-798**: Use of Hard-coded Credentials
#### Input Validation
- **CWE-20**: Improper Input Validation
- **CWE-73**: External Control of File Name or Path
- **CWE-434**: Unrestricted Upload of File with Dangerous Type
- **CWE-601**: URL Redirection to Untrusted Site
#### Sensitive Data Exposure
- **CWE-200**: Information Exposure
- **CWE-209**: Information Exposure Through Error Message
- **CWE-312**: Cleartext Storage of Sensitive Information
- **CWE-319**: Cleartext Transmission of Sensitive Information
- **CWE-532**: Information Exposure Through Log Files
**Usage**: Include CWE identifier in all vulnerability reports for standardized classification.
### MITRE ATT&CK
Reference relevant tactics and techniques for threat context:
#### Initial Access (TA0001)
- **T1190**: Exploit Public-Facing Application
- **T1133**: External Remote Services
- **T1078**: Valid Accounts
#### Execution (TA0002)
- **T1059**: Command and Scripting Interpreter
- **T1203**: Exploitation for Client Execution
#### Persistence (TA0003)
- **T1098**: Account Manipulation
- **T1136**: Create Account
- **T1505**: Server Software Component
#### Privilege Escalation (TA0004)
- **T1068**: Exploitation for Privilege Escalation
- **T1548**: Abuse Elevation Control Mechanism
#### Defense Evasion (TA0005)
- **T1027**: Obfuscated Files or Information
- **T1140**: Deobfuscate/Decode Files or Information
- **T1562**: Impair Defenses
#### Credential Access (TA0006)
- **T1110**: Brute Force
- **T1555**: Credentials from Password Stores
- **T1552**: Unsecured Credentials
#### Discovery (TA0007)
- **T1083**: File and Directory Discovery
- **T1046**: Network Service Scanning
#### Collection (TA0009)
- **T1005**: Data from Local System
- **T1114**: Email Collection
#### Exfiltration (TA0010)
- **T1041**: Exfiltration Over C2 Channel
- **T1567**: Exfiltration Over Web Service
**Usage**: When identifying vulnerabilities, consider which ATT&CK techniques an attacker could use to exploit them.
---
## Remediation Patterns
This section provides specific remediation guidance for common vulnerability types.
### SQL Injection Remediation
**Step 1: Identify vulnerable queries**
- Search for string concatenation in SQL queries
- Check for f-strings or format() with SQL keywords
- Review all database interaction code
**Step 2: Apply parameterized queries**
```python
# Python with sqlite3
cursor.execute("SELECT * FROM users WHERE id = ?", (user_id,))
# Python with psycopg2 (PostgreSQL)
cursor.execute("SELECT * FROM users WHERE id = %s", (user_id,))
# Python with SQLAlchemy (ORM)
from sqlalchemy import text
result = session.execute(text("SELECT * FROM users WHERE id = :id"), {"id": user_id})
```
**Step 3: Validate and sanitize input** (defense in depth)
```python
import re
# Validate input format
if not re.match(r'^\d+$', user_id):
raise ValueError("Invalid user ID format")
# Use ORM query builders
user = User.query.filter_by(id=user_id).first()
```
**Step 4: Implement least privilege**
- Database user should have minimum required permissions
- Use read-only accounts for SELECT operations
- Never use admin/root accounts for application queries
### XSS Remediation
**Step 1: Enable auto-escaping**
- Most modern frameworks escape by default
- Ensure auto-escaping is not disabled
**Step 2: Use framework-specific safe methods**
```javascript
// React: Use JSX (auto-escapes)
<div>{userInput}</div>
// Vue: Use template syntax (auto-escapes)
<div>{{ userInput }}</div>
// Angular: Use property binding (auto-escapes)
<div [textContent]="userInput"></div>
```
**Step 3: Sanitize when HTML is required**
```javascript
import DOMPurify from 'dompurify';
// Sanitize HTML content
const clean = DOMPurify.sanitize(userHTML, {
ALLOWED_TAGS: ['b', 'i', 'em', 'strong', 'p'],
ALLOWED_ATTR: []
});
```
**Step 4: Content Security Policy (CSP)**
```html
<!-- Add CSP header -->
Content-Security-Policy: default-src 'self'; script-src 'self' 'nonce-{random}'
```
---
## Advanced Configuration
This section contains detailed configuration options and tuning parameters.
### Example: SAST Tool Configuration
```yaml
# Advanced security scanner configuration
scanner:
# Severity threshold
severity_threshold: MEDIUM
# Rule configuration
rules:
enabled:
- sql-injection
- xss
- hardcoded-secrets
disabled:
- informational-only
# False positive reduction
confidence_threshold: HIGH
exclude_patterns:
- "*/test/*"
- "*/tests/*"
- "*/node_modules/*"
- "*.test.js"
- "*.spec.ts"
# Performance tuning
max_file_size_kb: 2048
timeout_seconds: 300
parallel_jobs: 4
# Output configuration
output_format: json
include_code_snippets: true
max_snippet_lines: 10
```
---
## Examples and Code Samples
This section provides comprehensive code examples for various scenarios.
### Example 1: Secure API Authentication
```python
# Secure API key handling
import os
from functools import wraps
from flask import Flask, request, jsonify
app = Flask(__name__)
# Load API key from environment (never hardcode)
VALID_API_KEY = os.environ.get('API_KEY')
if not VALID_API_KEY:
raise ValueError("API_KEY environment variable not set")
def require_api_key(f):
@wraps(f)
def decorated_function(*args, **kwargs):
api_key = request.headers.get('X-API-Key')
if not api_key:
return jsonify({'error': 'API key required'}), 401
# Constant-time comparison to prevent timing attacks
import hmac
if not hmac.compare_digest(api_key, VALID_API_KEY):
return jsonify({'error': 'Invalid API key'}), 403
return f(*args, **kwargs)
return decorated_function
@app.route('/api/secure-endpoint')
@require_api_key
def secure_endpoint():
return jsonify({'message': 'Access granted'})
```
### Example 2: Secure Password Hashing
```python
# Secure password storage with bcrypt
import bcrypt
def hash_password(password: str) -> str:
"""Hash a password using bcrypt."""
# Generate salt and hash password
salt = bcrypt.gensalt(rounds=12) # Cost factor: 12 (industry standard)
hashed = bcrypt.hashpw(password.encode('utf-8'), salt)
return hashed.decode('utf-8')
def verify_password(password: str, hashed: str) -> bool:
"""Verify a password against a hash."""
return bcrypt.checkpw(
password.encode('utf-8'),
hashed.encode('utf-8')
)
# Usage
stored_hash = hash_password("user_password")
is_valid = verify_password("user_password", stored_hash) # True
```
### Example 3: Secure File Upload
```python
# Secure file upload with validation
import os
import magic
from werkzeug.utils import secure_filename
ALLOWED_EXTENSIONS = {'pdf', 'png', 'jpg', 'jpeg'}
ALLOWED_MIME_TYPES = {
'application/pdf',
'image/png',
'image/jpeg'
}
MAX_FILE_SIZE = 5 * 1024 * 1024 # 5 MB
def is_allowed_file(filename: str, file_content: bytes) -> bool:
"""Validate file extension and MIME type."""
# Check extension
if '.' not in filename:
return False
ext = filename.rsplit('.', 1)[1].lower()
if ext not in ALLOWED_EXTENSIONS:
return False
# Check MIME type (prevent extension spoofing)
mime = magic.from_buffer(file_content, mime=True)
if mime not in ALLOWED_MIME_TYPES:
return False
return True
def handle_upload(file):
"""Securely handle file upload."""
# Check file size
file.seek(0, os.SEEK_END)
size = file.tell()
file.seek(0)
if size > MAX_FILE_SIZE:
raise ValueError("File too large")
# Read content for validation
content = file.read()
file.seek(0)
# Validate file type
if not is_allowed_file(file.filename, content):
raise ValueError("Invalid file type")
# Sanitize filename
filename = secure_filename(file.filename)
# Generate unique filename to prevent overwrite attacks
import uuid
unique_filename = f"{uuid.uuid4()}_{filename}"
# Save to secure location (outside web root)
upload_path = os.path.join('/secure/uploads', unique_filename)
file.save(upload_path)
return unique_filename
```
---
## Best Practices for Reference Documents
1. **Start with "When to use"** - Help Claude know when to load this reference
2. **Include table of contents** - For documents >100 lines
3. **Use concrete examples** - Code samples with vulnerable and fixed versions
4. **Map to frameworks** - OWASP, CWE, MITRE ATT&CK for context
5. **Provide remediation** - Don't just identify issues, show how to fix them
6. **Organize logically** - Group related content, use clear headings
7. **Keep examples current** - Use modern patterns and current framework versions
8. **Be concise** - Even in references, challenge every sentence

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# Workflow Checklist Template
This template demonstrates workflow patterns for security operations. Copy and adapt these checklists to your specific skill needs.
## Pattern 1: Sequential Workflow Checklist
Use this pattern for operations that must be completed in order, step-by-step.
### Security Assessment Workflow
Progress:
[ ] 1. Identify application entry points and attack surface
[ ] 2. Map authentication and authorization flows
[ ] 3. Identify data flows and sensitive data handling
[ ] 4. Review existing security controls
[ ] 5. Document findings with framework references (OWASP, CWE)
[ ] 6. Prioritize findings by severity (CVSS scores)
[ ] 7. Generate report with remediation recommendations
Work through each step systematically. Check off completed items.
---
## Pattern 2: Conditional Workflow
Use this pattern when the workflow branches based on findings or conditions.
### Vulnerability Remediation Workflow
1. Identify vulnerability type
- If SQL Injection → See [sql-injection-remediation.md](sql-injection-remediation.md)
- If XSS (Cross-Site Scripting) → See [xss-remediation.md](xss-remediation.md)
- If Authentication flaw → See [auth-remediation.md](auth-remediation.md)
- If Authorization flaw → See [authz-remediation.md](authz-remediation.md)
- If Cryptographic issue → See [crypto-remediation.md](crypto-remediation.md)
2. Assess severity using CVSS calculator
- If CVSS >= 9.0 → Priority: Critical (immediate action)
- If CVSS 7.0-8.9 → Priority: High (action within 24h)
- If CVSS 4.0-6.9 → Priority: Medium (action within 1 week)
- If CVSS < 4.0 → Priority: Low (action within 30 days)
3. Apply appropriate remediation pattern
4. Validate fix with security testing
5. Document changes and update security documentation
---
## Pattern 3: Iterative Workflow
Use this pattern for operations that repeat across multiple targets or items.
### Code Security Review Workflow
For each file in the review scope:
1. Identify security-sensitive operations (auth, data access, crypto, input handling)
2. Check against secure coding patterns for the language
3. Flag potential vulnerabilities with severity rating
4. Map findings to CWE and OWASP categories
5. Suggest specific remediation approaches
6. Document finding with code location and fix priority
Continue until all files in scope have been reviewed.
---
## Pattern 4: Feedback Loop Workflow
Use this pattern when validation and iteration are required.
### Secure Configuration Generation Workflow
1. Generate initial security configuration based on requirements
2. Run validation script: `./scripts/validate_config.py config.yaml`
3. Review validation output:
- Note all errors (must fix)
- Note all warnings (should fix)
- Note all info items (consider)
4. Fix identified issues in configuration
5. Repeat steps 2-4 until validation passes with zero errors
6. Review warnings and determine if they should be addressed
7. Apply configuration once validation is clean
**Validation Loop**: Run validator → Fix errors → Repeat until clean
---
## Pattern 5: Parallel Analysis Workflow
Use this pattern when multiple independent analyses can run concurrently.
### Comprehensive Security Scan Workflow
Run these scans in parallel:
**Static Analysis**:
[ ] 1a. Run SAST scan (Semgrep/Bandit)
[ ] 1b. Run dependency vulnerability scan (Safety/npm audit)
[ ] 1c. Run secrets detection (Gitleaks/TruffleHog)
[ ] 1d. Run license compliance check
**Dynamic Analysis**:
[ ] 2a. Run DAST scan (ZAP/Burp)
[ ] 2b. Run API security testing
[ ] 2c. Run authentication/authorization testing
**Infrastructure Analysis**:
[ ] 3a. Run infrastructure-as-code scan (Checkov/tfsec)
[ ] 3b. Run container image scan (Trivy/Grype)
[ ] 3c. Run configuration review
**Consolidation**:
[ ] 4. Aggregate all findings
[ ] 5. Deduplicate and correlate findings
[ ] 6. Prioritize by risk (CVSS + exploitability + business impact)
[ ] 7. Generate unified security report
---
## Pattern 6: Research and Documentation Workflow
Use this pattern for security research and documentation tasks.
### Threat Modeling Workflow
Research Progress:
[ ] 1. Identify system components and boundaries
[ ] 2. Map data flows between components
[ ] 3. Identify trust boundaries
[ ] 4. Enumerate assets (data, services, credentials)
[ ] 5. Apply STRIDE framework to each component:
- Spoofing threats
- Tampering threats
- Repudiation threats
- Information disclosure threats
- Denial of service threats
- Elevation of privilege threats
[ ] 6. Map threats to MITRE ATT&CK techniques
[ ] 7. Identify existing mitigations
[ ] 8. Document residual risks
[ ] 9. Recommend additional security controls
[ ] 10. Generate threat model document
Work through each step systematically. Check off completed items.
---
## Pattern 7: Compliance Validation Workflow
Use this pattern for compliance checks against security standards.
### Security Compliance Audit Workflow
**SOC 2 Controls Review**:
[ ] 1. Review access control policies (CC6.1, CC6.2, CC6.3)
[ ] 2. Verify logical access controls implementation (CC6.1)
[ ] 3. Review authentication mechanisms (CC6.1)
[ ] 4. Verify encryption implementation (CC6.1, CC6.7)
[ ] 5. Review audit logging configuration (CC7.2)
[ ] 6. Verify security monitoring (CC7.2, CC7.3)
[ ] 7. Review incident response procedures (CC7.3, CC7.4)
[ ] 8. Verify backup and recovery processes (A1.2, A1.3)
**Evidence Collection**:
[ ] 9. Collect policy documents
[ ] 10. Collect configuration screenshots
[ ] 11. Collect audit logs
[ ] 12. Document control gaps
[ ] 13. Generate compliance report
---
## Pattern 8: Incident Response Workflow
Use this pattern for security incident handling.
### Security Incident Response Workflow
**Detection and Analysis**:
[ ] 1. Confirm security incident (rule out false positive)
[ ] 2. Determine incident severity (SEV1/2/3/4)
[ ] 3. Identify affected systems and data
[ ] 4. Preserve evidence (logs, memory dumps, network captures)
**Containment**:
[ ] 5. Isolate affected systems (network segmentation)
[ ] 6. Disable compromised accounts
[ ] 7. Block malicious indicators (IPs, domains, hashes)
[ ] 8. Implement temporary compensating controls
**Eradication**:
[ ] 9. Identify root cause
[ ] 10. Remove malicious artifacts (malware, backdoors, webshells)
[ ] 11. Patch vulnerabilities exploited
[ ] 12. Reset compromised credentials
**Recovery**:
[ ] 13. Restore systems from clean backups (if needed)
[ ] 14. Re-enable systems with monitoring
[ ] 15. Verify system integrity
[ ] 16. Resume normal operations
**Post-Incident**:
[ ] 17. Document incident timeline
[ ] 18. Identify lessons learned
[ ] 19. Update security controls to prevent recurrence
[ ] 20. Update incident response procedures
[ ] 21. Communicate with stakeholders
---
## Usage Guidelines
### When to Use Workflow Checklists
✅ **Use checklists for**:
- Complex multi-step operations
- Operations requiring specific order
- Security assessments and audits
- Incident response procedures
- Compliance validation tasks
❌ **Don't use checklists for**:
- Simple single-step operations
- Highly dynamic exploratory work
- Operations that vary significantly each time
### Adapting This Template
1. **Copy relevant pattern** to your skill's SKILL.md or create new reference file
2. **Customize steps** to match your specific security tool or process
3. **Add framework references** (OWASP, CWE, NIST) where applicable
4. **Include tool-specific commands** for automation
5. **Add decision points** where manual judgment is required
### Checklist Best Practices
- **Be specific**: "Run semgrep --config=auto ." not "Scan the code"
- **Include success criteria**: "Validation passes with 0 errors"
- **Reference standards**: Link to OWASP, CWE, NIST where relevant
- **Show progress**: Checkbox format helps track completion
- **Provide escape hatches**: "If validation fails, see troubleshooting.md"
### Integration with Feedback Loops
Combine checklists with validation scripts for maximum effectiveness:
1. Create checklist for the workflow
2. Provide validation script that checks quality
3. Include "run validator" step in checklist
4. Loop: Complete step → Validate → Fix issues → Re-validate
This pattern dramatically improves output quality through systematic validation.